Expand help, improve error handling, and be more accepting of inputs.


git-svn-id: https://svn.salilab.org/imp/trunk@16608 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Also link in the source directory, to trick gcov into working with out of
source builds.


git-svn-id: https://svn.salilab.org/imp/trunk@16609 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Map paths back to source directory so out of source builds work.


git-svn-id: https://svn.salilab.org/imp/trunk@16610 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Strip source path from .gcov files, and clean them from the temporary
directory to avoid confusing lcov later.


git-svn-id: https://svn.salilab.org/imp/trunk@16611 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Update for new, easier way to find applications. Find application sources
even when building out of source.


git-svn-id: https://svn.salilab.org/imp/trunk@16612 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix build in fast mode.


git-svn-id: https://svn.salilab.org/imp/trunk@16613 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
rename example app file

git-svn-id: https://svn.salilab.org/imp/trunk@16614 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
suppress warning

git-svn-id: https://svn.salilab.org/imp/trunk@16615 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add test macros to replace asserts which can go away if you do -DNDEBUG

git-svn-id: https://svn.salilab.org/imp/trunk@16616 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
use test macros

git-svn-id: https://svn.salilab.org/imp/trunk@16617 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
suppress swig warning

git-svn-id: https://svn.salilab.org/imp/trunk@16618 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add support for building with cmake

git-svn-id: https://svn.salilab.org/imp/trunk@16619 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
lazy fix avoiding having two headers with the same name for now

git-svn-id: https://svn.salilab.org/imp/trunk@16620 e91f8c7b-0e32-4433-a9ac-4502d39a4eab