Added file doc/notes/makefiles
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Edited dox files, moved compile-time options to user guide.