Db commands were moved into Command dir
AnnotationStructures object was not moved to Command dir
Need to create sub-directories
Add "translated_processed_pseudogene" to biotype hash
Fix bug in file format
Simplify annotate-chromosome workflow
Run workflow with workflow object rather than xml
Preload substructures for speed
Add a log directory for the workflow
Merge branch 'fireteam2' into gb_master