Initial commit
 Initial commit


Former-commit-id: 8e17b2575f7f84095408b540f94c5033bca9ae1a
	modified:   denovogear-code/README.txt
	modified:   denovogear-code/README.txt


Former-commit-id: b0c3ae08fa210c6261c01e04e9a6ec7a0feb39ca
modified readme
modified readme


Former-commit-id: 5d5722a6054a855745553c7676ca0799a8495b43
Added BCF Parser and INDEL DNM Detection
Added BCF Parser and INDEL DNM Detection


Former-commit-id: 84bd392a5088dc92411fb46cfa4ac6604d2efc47
Added BCF Parser and INDEL DNM Detection


Former-commit-id: e082117c73024598b34d4c08fa37097ed8262d3c [formerly 84bd392a5088dc92411fb46cfa4ac6604d2efc47]
Former-commit-id: 92e78dac0bfa4ac7e8c23b3dd5abf5a80ddf33b7
cleanup
cleanup


Former-commit-id: efb731200619451169dd555c187cf22c88fa2adc
cleanup


Former-commit-id: d9c9492883e0ff06616f161504c510cb2dbdeae6 [formerly efb731200619451169dd555c187cf22c88fa2adc]
Former-commit-id: 1ea383f88081acb03cbba55fe36fbeddc4e79018
output ALT, updated README
output ALT, updated README


Former-commit-id: 6f6a0433e8133da703808baec4f3cc51ce8f84ab
output ALT, updated README


Former-commit-id: c75fd813b8b485f117106b7c725e909e12aadcc2 [formerly 6f6a0433e8133da703808baec4f3cc51ce8f84ab]
Former-commit-id: bb4065fc12556ccc73f72098c934c4cc1585fe8b
Merge branch 'master' of ssh://git.code.sf.net/p/denovogear/code
Merge branch 'master' of ssh://git.code.sf.net/p/denovogear/code


Former-commit-id: 4f12a5dbfc6e8c9ec2116aadcce82207abbb047d
Merge branch 'master' of ssh://git.code.sf.net/p/denovogear/code


Former-commit-id: e0486e350cf7b834a7bbd9bc9e27bec4664008dd [formerly 4f12a5dbfc6e8c9ec2116aadcce82207abbb047d]
Former-commit-id: 2f8b4f90d7b35d1f6957c7f516e6e68e2d6a91ba
variable mu based on indel lengths, internal lookup table generation, modified lookup table,  cmd line parameters
variable mu based on indel lengths, internal lookup table generation, modified lookup table,  cmd line parameters


Former-commit-id: dd0c9b282da798c1fcee1ddbbf49100527915fe6