Finish up DevGuide Reorg

I adjusted the chapter numbers (and file names) to disregard the alloy and file management chapters that we'll add later. Originally, I had planned on just skipping the numbers we were going to use for those two chapters, but I changed my mind and thought it best that we not skip any numbers and go straight through (01, 02, 03, ... etc) and adjust ordering as we add new chapters later.

Themes & Layouts: reorganized the sections in themes to make them flow better. This was a quick win.

General:
- added/updated transitions and intros
- updated topic lists in several of the intros.
- bumped up appropriate headers to level 2 (##)
- checked and updated just a small few section headers to use title case
- adjusted code to 80 columns.
- adjusted some list formatting

Tested with asset importer. I'll email a picture of the TOC.

Rich, if you would, please merge into master. Thanks.

@rbohl