enh: update with new neurodebian script
enh: add support for vagrant
fix: remove sudo for bash
fix: cleaned up install script
add matplotlib
Merge remote-tracking branch 'upstream/master' into enh/vagrant

* upstream/master: (22 commits)
  Reformated inputs and added tests
  fix: fixed autotest for applytopup
  Fixed file extension
  Fixed test files import.
  FIX: topup out file and params
  fixed possible values for -datatype parameter of tracks2prob interface. Previous values were in error. correct values obtained from: http://www.brain.org.au/software/mrtrix/general/formats.html#datatypes
  fix: construct sparse matrix using topological sort order
  autogenerated tests
  added dummy files for testing new mrtrix interfaces
  updated CHANGES log
  Updated new mrtrix interfaces to new out_file format
  Added GenerateDirections, FindShPeaks, Directions2Amplitude interfaces wrapping gendir, find_SH_peaks and dir2amp mrtrix commands.
  Removed ipdb trace
  Fixing path issues for CMTK Parcellate dilated ROI files
  tst: auto test generation for FUGUE
  fix: warp/unwarp arg parsing for use w/o an in_file
  fix: typo in fugue parameter
  add: pycharm .idea/ directory to .gitignore
  fixed errors from DOCTEST, now OK.
  fixed pull request issues: wrapping Surface2VolTransform, -moved from preprocess.py to utils.py -improved input descriptions -renamed output suffix
  ...
doc: added documentation for vagrant
doc: added internet requirement
Merge remote-tracking branch 'upstream/master' into enh/vagrant

* upstream/master:
  changelog cleanup
  added test file for TCorr1D
  added missing import
  added new interface info to the changelog
  added example to docstring, removed leftover genfile
  fixed workflow name
  Made revisions to the new 3dTCorr1D interface.
  Introduced a wrapper for 3dTcorr1D.
doc: added to CHANGES and clarified wording in vagrant doc
Merge pull request #749 from satra/enh/vagrant

ENH: add support for playing with nipype using vagrant