First commit
Add project and gitignore
.DS_Store not tracked.
Some outliers removed
Added cross-validated smoothing.
Plotting improved, added in-page links and TOC.
Several tests for EC50, H2 strain.
Ignore html, md, cache and figure
Other outliers removed. Added a plot to show the different distribution of ages between vaccinated and non-vaccinated.
plot_antibody now shows vaccinated and non-vaccinated on the same plot.
The segmented regression has been removed entirely.
Load the raw data, plot summary data and exclude outliers. Save ic_data and ec_data
Split in several files to improve readability
In preliminary we repeat the analysis performed in STATA
Initial definitions
Smoothing are also now on the same plot.
Same scale has been applied to all EC and IC.
Discard all html and md files. Added the list.
Added the analysis of deltaIC-EC, with some modification in the functions to plot it.
5-effects contains the ancova analysis to study the effect of age
and vaccination status on the antibody titre.
Empty dots, alpha of the shaded area.
Corrected a typo in 5-effects.Rmd
Now saves EPS figures
Save images to EPS files
Several changes, mainly in the layout of figures. Additionally, bootstrap not included in the final analysis.