Fix includes.


git-svn-id: https://svn.salilab.org/imp/trunk@16238 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add missing endline.


git-svn-id: https://svn.salilab.org/imp/trunk@16239 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move general EM functionality from em3d_dock application

git-svn-id: https://svn.salilab.org/imp/trunk@16240 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
propagate dependencies

git-svn-id: https://svn.salilab.org/imp/trunk@16241 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
special case compatibility directly

git-svn-id: https://svn.salilab.org/imp/trunk@16242 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix test case with protection change

git-svn-id: https://svn.salilab.org/imp/trunk@16243 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove base special case

git-svn-id: https://svn.salilab.org/imp/trunk@16244 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Set executable bit.


git-svn-id: https://svn.salilab.org/imp/trunk@16245 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
test needs base for example path

git-svn-id: https://svn.salilab.org/imp/trunk@16246 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove classes that moved to em module

git-svn-id: https://svn.salilab.org/imp/trunk@16247 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Ignore local changes to configure/config.h.


git-svn-id: https://svn.salilab.org/imp/trunk@16248 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure IMP.saxs is available.


git-svn-id: https://svn.salilab.org/imp/trunk@16249 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move dispatcher back

git-svn-id: https://svn.salilab.org/imp/trunk@16250 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add (failing) test for attribute access from python in the model

git-svn-id: https://svn.salilab.org/imp/trunk@16251 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Clean up attribute access

This change has two parts (boo, hiss):
- rename ParticleKey and ParticlesKey to ParticleIndexKey and ParticleIndexesKey as that is what they store. Backwards compat typedefs are provided.

- expose access of the attibutes stored in the Model to python

git-svn-id: https://svn.salilab.org/imp/trunk@16252 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add a test to make sure alignment parameter files are consistent with the code.


git-svn-id: https://svn.salilab.org/imp/trunk@16253 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
replace UNARY_FUNCTION macro

git-svn-id: https://svn.salilab.org/imp/trunk@16254 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Remove unused files.


git-svn-id: https://svn.salilab.org/imp/trunk@16255 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
forgot to mark ParicleIndexesKey as a value

git-svn-id: https://svn.salilab.org/imp/trunk@16256 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make Configurations and ConfigurationSets more compact by only storing the changed attributes

git-svn-id: https://svn.salilab.org/imp/trunk@16257 e91f8c7b-0e32-4433-a9ac-4502d39a4eab