ISPN-3560 Size after a suspended transaction is resumed is incorrectly
calculated

* Fixed EntrySet, KeySet, Values and Size commands to count context
values except if they were removed to be more consistent with what
data is available to the user

* Also fixed LockingTest by adding eventually to prevent random failure
ISPN-3563 Some logging methods in Infinispan Core at error level are missing the ID
ISPN-3563 Some logging methods in Infinispan Core at warn level are missing the ID
ISPN-3563 Fix typos in log method names
ISPN-2815 Put to Transactional cache with enabled indexing to InfinispanDirectory doesn't work properly

* Re-enable and add test
ISPN-2815 Put to Transactional cache with enabled indexing to InfinispanDirectory doesn't work properly
ISPN-3151 Disable transaction table completed transactions cleanup service when total order is used