Closes issue. Log messages are now extracted for every trial and added to the smell structure.
The log field in smell can now also be updated individually through the buildSmell('updateFields') option.
Closes #46 and closes #47 . When notes are extracted they are sent to the log window, and therefore also present in the log field in the smell structure. Changed the file structure of the notes functions. They have their own package in the +protocolUtilities package. Fixed a couple of bugs relating to notes and log window with the manualProgrammingStim.