overwritten changes.
Merge branch 'master' of https://github.com/apfejes/epigenetics-software.git
Merge branch 'master' of https://github.com/apfejes/epigenetics-software.git
Git told me to commit ConnectToMongo before I could pull. No changes
here.
Merge branch 'master' of https://github.com/apfejes/epigenetics-software.git
Height of waves now determines when to stop (at 20% of tallest point)
Print thread works around python bugs to give a clean looking exit.
Wave and Wig file generators write out to locations determined by the
input file.
WaveGenerator handles argument of input file.
New parameters in input file.
Small optimization - use more efficient string handling for printing out
in high volume string processing.
Merge branch 'master' of https://github.com/apfejes/epigenetics-software.git
Rewrote FilesInDirectory to insert data files row by row.
Rewrote InsertToMongo to be a simple function that takes a dictionary
and inserts into collection in mongo.
Rewrote mongoAPI to ask for user input for collection name and use new
functions found in FilesInDirectory
Move all of the Chip-Seq (Wave Generator) code into it's own directory,
so as not to clutter up the root.
Restructuring Mongodb code - removing hyphen from name for easier
integration.  Cleaning up imports.
Code Cleaning!
Added Mongo_Connector, to simplify handling of Mongo objects
Mongo Connector now uses an object, so multiple connections can be
established at the same time.
Adding __init__.py to MongoDB to make this directory (and subdirectory)
into modules, rather than just directories.  This allows importing from
other python scripts external to the directory.
Functioning Generic Mongo connector (API). Only performs connection,
insert and disconnect.
First Pass Import Wave to DB script.
Adding test wave file data set.
More Generalization for Mongo_Connector, to allow database to be
selectable.
Now providing a database.conf file, so values are not hardcoded.
Mongo_Connector returns data from inserts.
ImportWavetoDB uses database.conf file, and provides count of records in
table after insert.
Auto-clean up of inserts in WaveGenerator
Add init.py to WaveGenerator.