Add thesis report .tex file without content
Add explanatory comments to package imports and other LaTeX settings
Add title page explanation and abstract placeholder

The final version will not use LaTeX for this, but it's useful
to include it for now anyway to give a clearer picture of the
emerging end result.
Add Acknowledgement, ToC and empty Introduction

A preliminary version of the Acknowledgement section is added
before the ToC (table of contents, also added by this commit),
contrary to what is proposed at
http://www.fkm.utm.my/~shari/download/phd%20guide.pdf
because Acknowledgement is not included in the ToC.
An empty Introduction section is added to be displayed in ToC.
Some rewording of the title page.
Empty pages inserted where appropriate.
Add description of JavaScript in Introduction
Add references using natbib