Corrected SCM in POM, and added issue management.
Created TrivialStats.
Do ScopFactory.setScop() only in main method, not buildDefault().
Print to stderr, not stdout.
Added a "not" method.
Made a constructor SimpleResult(Result).
Working to make CensusJob play well with web-based calls, yet not store
AFPChain. This commit calls a method in biojava-structure that's
currently only in my fork.
Added factory methods for significance thresholds we're using in the
paper.
Call ScopFactory.setScop() only in main methods and tests. Also added a
usage statement for PdbClusteringScopDescriptionCensus.
Accept an arbitrary SCOP version.
Just added a static member TRUE_SCOP_CLASSES.
Use ResidueRange.parse(String, AtomPositionMap) to parse range string.
Simplified the interface of Protodomain: there's no reason to accept
keepStructure and order.
Continued simplifying the interface of Protodomain.
Updated Biojava to 3.0.7 per update today, and Log4J to 2.0-beta8.