Removed test patch for dealing with spatstat import problem
Add what was needed to include C++ functions
Separating C++ and R versions. Also, new parms.
Added required components for Rcpp package
Replaced run_sodi with Rcpp version
Updated plotting functions to take Rcpp ver. output
Working Rcpp version of run_sodi
Fixed CSI functions for Rcpp output
New test script
Minor tweak on bounding box
Package build update
Added data.table to Depends
Bugfix in Rcpp program
Modified core function to allow max infections
Wrapper functions now set up for batch runs
Plot function tweaked for new parameter setup
Create default parms set
Updated test scripts
Package build files
merging