Added ploidy calling to Haloplex pipeline.
Added new variantannotator
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Updates on haloplex pipeline.
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge pull request #59 from PatrickDeelen/master

RNA-seq pipelines udates
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Small bugfixes in Haloplex pipeline + updates.
Merge pull request #60 from freerkvandijk/master

Bugfixes in haloplex pipeline
Merge pull request #61 from PatrickDeelen/master

RNA-seq pipelines udates
Merge branch 'master' of github.com:PatrickDeelen/molgenis-pipelines
Added a protocol to convert SNVMix genotypes to Impute2 gen format
Merge pull request #63 from DashaZhernakova/master

SNVMix to gen converter added
Merge branch 'master' of github.com:PatrickDeelen/molgenis-pipelines
Merge pull request #64 from PatrickDeelen/master

RNA-seq pipelines updates
Merge branch 'master' of github.com:molgenis/molgenis-pipelines
Changed SNVMix to gen converter
Merge pull request #65 from DashaZhernakova/master

Bug fixes in SNVMix to gen converter
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
RNA-seq genotype calling qc