Altering interface between MASS and what was called QT (now MECQ).  MECQ is now designed to run multiple correction tools at the same time.  The idea being that we can then go on to compare assemblies of the different correction libraries using MultiMASS.

This doesn't compile yet!!
Some changes to enable MECQ from the CLI.  Seems to work ok from initial testing.
NOTE: still need to test interface with MASS.
Exported handling of assembly analysis to an external program.