Updated atom energies for CCSD(T)-F12 jobs

Previous bond energies were calculated using
the F12b method,updated them to now use the F12a energies.

These energies have been provided by Caleb Class
and Beat Buesser.
Add corrections for various model chem in cantherm

All these values are still a work-in-prgress obtained from Beat.
However, the recent updates for cantherm made by Shamel and I are a bit
incomplete without these.

Atomic energy corrections are provided for:
CCSD(T)-F12/cc-pVDZ-F12_H-TZ
CCSD(T)-F12/cc-pVDZ-F12
CCSD(T)-F12/cc-pCVDZ-F12
CCSD(T)-F12/aug-cc-pVDZ
B-CCSD(T)-F12/cc-pVDZ-F12
B-CCSD(T)-F12/cc-pCVDZ-F12
B-CCSD(T)-F12/aug-cc-pVDZ
DFT_ks_b3lyp
MP2_rmp2_pVDZ
MP2_rmp2_pVTZ
MP2_rmp2_pVQZ
CCSD_DZ
CCSD_TZ
CCSD_QZ
CCSD_core_DZ

Bond energy corrections were added for CCSD(T)-F12/cc-pVDZ-F12

Additionally, there were bug fixes and additional unit tests for the
Molepro parser.
Tidy up thermo comments in chemkin files.

-Removed unecessary declaration line '! Thermo Comments:'
-Added 'Thermo library:' label to thermo originating from thermo libraries.
-Removed the NASA fitting to Wilhoit comments because they clutter up the comments
Tidy up kinetics comments in chemkin files.

-Removed unecessary declation of '! Kinetics comments:'
-Fixed labeling of exact rate rule matches (was falsely labeling some kinetics
as estimates when they were actually exact matches)
-Removed extra line with reaction string using original names.  The chemkin
reaction string should be sufficient.
-Removed line commenting on flux pairs (generates clutter and not super useful)

Concern:
- When merging RMG models together, a lot of comments will be duplicated.
This should be fixed later.
Added Chlorine to allowed atoms for Cantherm.
Fixed transcription error for Sulfur experimental enthalpy of formation at 0K.

Now matches http://www.gaussian.com/g_whitepap/thermo.htm
Cantherm: added energy corrections for Chlorine for CBS-QB3 methods.
Added BAC for H-Cl bond for CBS-QB3 method.
Adding Chlorine to the allowed atomtypes for RMG-Py.

Can now add species including chlorine to your input files either
using smiles or adjacency lists.  RMG families currently cannot handle
chlorine, but they can be added as either inerts or reactive species
if a reaction library is given.
Fixed bug of mutating reactionDict list, causing large memory spikes.

Due to extending my_reactionList with ownReverse reactions, we were mutating
the reactionDict on accident.  This led to my_reactionList having billions of
reactions when there should only be around 10 reactions.  We saw huge
memory spikes due to this.
Move import from within a function to the top.
Merge remote branch 'origin/master' into chemkinimporter

Conflicts:
	rmgpy/chemkin.py
Resolved by using Connie's version (tidying the thermo comments)
Merge branch 'chemkinimporter' of github.com:vrlambert/RMG-Py into chemkinimporter
Fix typo in previous commit
Add blank known species files to recently added
mechanisms.
A few more known species in MB-Fisher
Merge branch 'chemkinimporter' of github.com:vrlambert/RMG-Py into chemkinimporter