SoapEU-function.t: Updated expected version of a genome to current
(NC_006469.3), fixed number of tests, and removed tabs.
Build.PL & MYMETA.json: Added SOAP::Lite v0.716 in
recommended modules. Although SOAP::Lite already comes with
Perl distribution, this version fixed a bug that was causing
some SoapEU-unit.t tests to crash. My Strawberry Perl 5.16
comes with v0.715, and the module update only came with 5.18
AnalysisFactory_soap.t & Analysis_soap.t: Changed tests to 0.
The EMBL-EBI Soaplab server was decommissioned on February,
and the URL used to connect is gone, so tests have nowhere
to connect and fail with "404 Not Found".
BWA.t, Bowtie.t, Maq.t & Samtools.t: Moved tests using
"_translate_params" subroutine (translate opts to command line)
into TODO blocks, since they randomly fail
because of hash randomization introduced in perl 5.17+.
Used the TODO message from WBCommandExts.t for consistency.
AssemblerBase.pm: In "reset_parameters", added an intermediary hash
to avoid passing an array to "_set_program_options" that can
potentially contain the same parameter multiple times
(some with value, some with undef), with unexpected consequences.