[FIX] Fixing incomplete copy-constructor for OA q-gram index

git-svn-id: http://svn.seqan.de/seqan/trunk@14437 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Using unique_ptr instead of auto_ptr in C++11.

git-svn-id: http://svn.seqan.de/seqan/trunk@14438 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Removing unused typedef in file_stream.h.


git-svn-id: http://svn.seqan.de/seqan/trunk@14439 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Adding demo for integrateAlign().

git-svn-id: http://svn.seqan.de/seqan/trunk@14440 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Including demo in documentation for integrateAlign().


git-svn-id: http://svn.seqan.de/seqan/trunk@14441 e6417c60-b987-48fd-844e-b20f0fcc1017
[FEATURE] Adding function computeAlignmentStats().

git-svn-id: http://svn.seqan.de/seqan/trunk@14442 e6417c60-b987-48fd-844e-b20f0fcc1017
[DOC] Including demo for computeAlignmentStats() in dox documentation.


git-svn-id: http://svn.seqan.de/seqan/trunk@14443 e6417c60-b987-48fd-844e-b20f0fcc1017