You can do a git show <hash> for the commits you will send in the pull request before opening it (or see them online) to be sure they have whatever you want or not.

By "pulled things" do you mean changes that were already merged to the repo? Is hard to help when I can't see what did you do exactly, but maybe if you send me a copy of your working tree (tar -cvzf dmd.tar.gz dmd/) I could help you to find that out.