Just declaring what the methods are and how they'll work
Added angle.py to extract bond angles (like contact.py and dihedral.py), and internal.py to extract the a complete set of redundant internal coordinates
I think it's working now
I think it's working now
Cleaned up a little bit; I think there is still a problem though -- i'm getting 3 more nonredundant internal coordinates in alanine than I should
remove extranious print statement
Fixed critical segfault bug in angles code when there was more than one frame in trajectory
Merge pull request #115 from SimTk/acf_fix

Acf fix.  fixes issue #109
Minor docstring enhancement in msm_acf
Fixed X = list.remove(-1) issue in CalculateClusterRadii.py.  closes issue #120
Just declaring what the methods are and how they'll work
Added angle.py to extract bond angles (like contact.py and dihedral.py), and internal.py to extract the a complete set of redundant internal coordinates
I think it's working now
I think it's working now
Cleaned up a little bit; I think there is still a problem though -- i'm getting 3 more nonredundant internal coordinates in alanine than I should
remove extranious print statement
Fixed critical segfault bug in angles code when there was more than one frame in trajectory
fixes in progress
moved test to tests/ dir and fixed a pep8
moved test to tests/ dir and fixed a pep8