Merge pull request #410 from wgerlach/develop

api example scripts
Added two python examples
Merge branch 'develop' of http://github.com/MG-RAST/MG-RAST into develop
kevin created a directory for R based API examples
added scripts and placeholders for R based API examples
add couple simple r scripts
more comments for python example
Merge branch 'develop' of http://github.com/MG-RAST/MG-RAST into develop
provided downloadMGR in perl
Merge pull request #412 from DrOppenheimer/develop

simple R example to get list of ids for public datasets
Merge pull request #411 from wltrimbl/develop

Added two python examples
updated example code to use new api format correctly
api fix: now correct error caodes passed in header
api feature addition to make Andi happy: download annotated sims or seqs filtered by annotation text
api feature addition to make Andi happy: added verbosity options (stats, metadata, full) to query output to return full metagenome objects
Merge pull request #413 from teharrison/develop

api updates
upload page now accepts small files if they are guessed to be amplicon
API: added header (column names) and footer (capture completion) to tabbed annotation resource
Merge pull request #414 from teharrison/develop

API output upgrade, Upload filesize improvements
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