bioc version bump

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76971 bc3139a8-67e5-0310-9ffc-ced21a209358
bump version for devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76972 bc3139a8-67e5-0310-9ffc-ced21a209358
Reporting total number of peptides in dbUniquePeptideSet. Fixes issue #41.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76973 bc3139a8-67e5-0310-9ffc-ced21a209358
New mergedEMRTs arg in findEMRTs. Closes issue #38.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76974 bc3139a8-67e5-0310-9ffc-ced21a209358
fix synapterTiny

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76975 bc3139a8-67e5-0310-9ffc-ced21a209358
resave synapterTiny with xz compress and compression_leve 9

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76976 bc3139a8-67e5-0310-9ffc-ced21a209358
installation instruction

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76977 bc3139a8-67e5-0310-9ffc-ced21a209358
remove mergedEMRTs as an option in searchGrid - using transfer

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76978 bc3139a8-67e5-0310-9ffc-ced21a209358
added mergedEMRTs arg to synergise

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76979 bc3139a8-67e5-0310-9ffc-ced21a209358
fixed typo - duplicated the

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76980 bc3139a8-67e5-0310-9ffc-ced21a209358
fixed typo in dbUniquePeptideSet message

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76981 bc3139a8-67e5-0310-9ffc-ced21a209358
explicitly checking that the filenames list has one entry per element

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76982 bc3139a8-67e5-0310-9ffc-ced21a209358
new performance2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76983 bc3139a8-67e5-0310-9ffc-ced21a209358
fix matchedEMRTS input to synergise

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76984 bc3139a8-67e5-0310-9ffc-ced21a209358
new filter on peptide length

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76985 bc3139a8-67e5-0310-9ffc-ced21a209358
better use all.equal than ==, you silly

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76986 bc3139a8-67e5-0310-9ffc-ced21a209358
fix syntax

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@76987 bc3139a8-67e5-0310-9ffc-ced21a209358
NEWS conflict fixed

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@77018 bc3139a8-67e5-0310-9ffc-ced21a209358
fixed bug when using findEMRTs = 'copy'

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@77019 bc3139a8-67e5-0310-9ffc-ced21a209358
conflicts...

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/synapter@77020 bc3139a8-67e5-0310-9ffc-ced21a209358