completing merge
merging gui
Looks like I've gone as far as I can with Tix, going over to ttk.
added ttk hook and its so much better, we will be using this
Functional direcotry structure along with shamelessly pulled vertical scroll bar class
ttk is working, added directories, options, now going to test it
cleaned up directory structure
 moving some more stuff
Adding make app that will bundle to OsX
Final options installed, can finallly execute. Lots of formatting due to new PEP8 installer
Changed the definition of functional to * or being empty
changed path of junctional data files
formatting error in argparse
redoing * for cdr3 aa
got execution scheme working now, just got to finish
split fasta can now be run seperately
forgot import sys
adding doc
changing counting logic in split_fasta
oops