Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Merge pull request #73 from DashaZhernakova/master

Added the pipeline to quantify expression on the gene level in RNA-seq data
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Compute5 in-house DNA analysis pipeline
Updates on compute5 in-house pipeline
small fix
Updates
Small bugfix haloplex pipeline
Merge pull request #74 from freerkvandijk/master

Bugfix haloplex pipeline + compute5 in-house
Merge pull request #75 from DashaZhernakova/master

Fixed some bugs in RNA-seq_quantify_gene_level pipeline
Bcl2FastQ and Createruns pipelines for Compute5
Merge pull request #76 from Gerbenvandervries/master

Bcl2FastQ and Createruns pipelines for Compute5
Added a parameter
removed mapped parameters
Merge pull request #77 from Gerbenvandervries/master

Removed mapping in 2 workflows, and added echo-ing to a protocol.
allow max two mismatches between barcodes, and bugfix GAF barcodes.
Merge pull request #78 from Gerbenvandervries/master

allow max two mismatches between barcodes, and bugfix GAF barcodes.
Updates on in-house pipeline documentation in generated README.txt and QCReport.pdf
Merge pull request #79 from freerkvandijk/master

Updates on in-house pipeline documentation in generated README.txt and Q...