Update comments to hopefully clarify test goal
Added options for toggling use of cluster for assemble via the command-line
Prettier printing of pipeline descriptions.
Pipelines are only enumerated when the user does not specify a pipeline name
Split TEMMosaic pipeline into AdjustContrast and Mosaic pipelines
SliceToVolume Transforms had incorrect transform checksum.
Tweaks for generating stos HTML reports.
Refactored generation of HTML paths in reports
Transforms now have links generated in web pages
Added transforms to stos summary.
Added a script to produce stos reports
SliceToVolume was creating VikingXML files with the slice-to-volume registration missing.
tweak: Reduce number of newlines in VikingXML files generated.
Merge branch 'dev'