Add build target for GNU parallel. Thanks to Mick Watson
Do not crash when dl_name is not found in NCBIRest
Provide download and indexing of genomes using Galaxy rsync servers. Generalize galaxy location file creation and add additional indexes
Provide more flexibility in finding Picard jar for indexing by also using CloudBioLinux default location
Merge pull request #65 from brainstorm/master

NCBIRest dbsnp crash on PhiX
Fix for missing genome indexes during manual indexing. Thanks to @brainstorm
Add python libraries used by CloudMan boot
Include bedGraphToBigWig in UCSC tools
Merge branch 'master' of github.com:chapmanb/cloudbiolinux
Solve similar crash for UCSCGenome...
Resort to genome_name for name
Ensembl should be the last one with dl_name issues
Merge pull request #66 from brainstorm/master

UCSCGenome similar crash on dl_name attribute
Catch errors and provide warnings for trying to get RNA-seq and dbSNP resources that are not available. Thanks to @brainstorm. Closes #67
Proteomics: Rework protk installation for new ruby gem install approach. Allow install from either rubygems or source.
Proteomics: Add searchgui and peptideshaker install to bio_proteomics.