some fixes
minor edit
Update README.md
starting to handle source vs. submission uploads
minor edits
did not need that setting
update logs on exit.
only for debugging
updated gitignore
typo
modifying intake to decrease possibility of duplicates
typo
another typo
minor edits, stubs for better j3m handling
better j3m parsing
finalizing j3mparsing
better package handling
Update conf.py
removing cruft
typo fix