add restore_genome config
implemented the post evolution analysis: extracting information from ANC model
still implementing the History to extract the network information out
updated the documentation
updated the documentation
add more configuration on exporting graphviz
continue implementing extraction of network details
still implementing the extract of network information
changed the ARGS setting
updated the makefilea nd biojazz.pl to receive arguments better
update the Export GraphViz configuration when rescoring
implemented the regular expression and matching part, need to implement the output of those informations
fixed a small bug
Finally implemented the whole extracting of network interactions
fixed small problem