tiny lovd html change
Initial fix for hgsql warning message re command line password, refs #11516
Placed all config values in temp file instead of just password, propagated change to related functions
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
Doing a git pull, nothing to see here.  Move along.
Update md5sum for newly formatted V3 clusters file
Special handling of antibody target ('factor') CV links.  As a single factor may have multiple antibodies, show all for the factor.  Response to QA question 6, note 52.  refs #100097
Update downloads for reformatted V3 clusters file.  refs #10097
Staging new TFBS Clustered Metadata V3 on beta refs #10097
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
moving lovd otto scripts into otto dir
Add description of new file format for clusters. refs #10097
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
Release log update
Encode release log update
MLQs #11474 and #11504 alerted us to strand errors for some SNPs that
caused incorrect allele frequencies, sometimes making a rare SNP seem
common e.g. when the alleles are C/G and dbSNP's SNPAlleleFreq contains
- strand data while dbSNP's SNPAlleleFreq_TGP (1000 Genomes) always has
+ strand data.  I was using an insufficient kludge to detect strand-swapping.
Now strand is taken from bNNN_SNPContigLoc so we know exactly when to
complement alleles before adding counts.
fixes #11544
Tweaked phyloGif/makefile's installation to tolerate the use of the same
directory for CGI binaries and utils.
If a non-standard $SSL_DIR has been specified, add the necessary lib and inc settings.
Changing visibility of track from default dense to hide and short label to V3 per conversation with Kate for first release refs #10097
Adding details about score and related tables for TFBS Clusters V3 html page refs #10097