[FIX] Fixed a index out of bounds problem with the wotd.
Merge pull request #91 from singerj/master

[FIX] Fixed a index out of bounds problem with the wotd.
[FIX] Fixing reading of GFF records with empty trailing tags.

Skipping blanks instead of whitespaces now.

Fixes Ticket http://trac.seqan.de/ticket/1127
Merge pull request #94 from holtgrewe/hotfix/gff_empty_trailing_tag

[FIX] Fixing reading of GFF records with empty trailing tags.
[FIX] Addding required include for ptrdiff_t.

Was missing, triggered by C++11 mode of MinGW 4.7.2.
[FIX] Using manual implementation of isblank() in MinGW.

MinGW 4.7.2 does not find this function in C++11 mode.
[FIX] Using tmpnam() instead of _tempnam() in MinGW.

The C++11 mode of MinGW 4.7.2 does not find the symbol _tempnam().
Merge pull request #100 from holtgrewe/hotfix/razers3_mingw_fix

Making RazerS 3 compile on MinGW.
[FIX] Using CMAKE_FIND_PREFIX_PATH in CMakeLists.txt.

It turns out that one should use CMAKE_FIND_PREFIX_PATH instead of CMAKE_FIND_ROOT_PATH for find_package() to work.
Merge pull request #102 from holtgrewe/hotfix/cmake_find_root_path

[FIX] Using CMAKE_FIND_PREFIX_PATH in CMakeLists.txt.
[FIX] Fixing nightly build warnings in genomic_variants.cpp in MSVC.
Merge pull request #107 from holtgrewe/hotfix/mason_nightly_warning

[FIX] Fixing nightly build warnings in genomic_variants.cpp in MSVC.
[FIX] Reverting 308d5e which causes a regression with empty SWIFT pattern.

The new test in test_index_swift.cpp breaks without the patch in index_wotd.h.
Merge pull request #109 from holtgrewe/fix_regression_308d5e_master

[FIX] Reverting 308d5e which causes a regression with empty SWIFT pattern
[FIX] Not writing out empty lines to FASTA any more.

This happened if the line length was a divisor of the sequence length.
Merge pull request #110 from holtgrewe/hotfix/empty_line_write_fasta

[FIX] Not writing out empty lines to FASTA any more.
[FIX] fixed bug that aligned reads with insertions instead of mismatches at the read
 end (wrong sinkPos)
Merge pull request #126 from weese/razers3-hotfix

[FIX] fixed bug that aligned reads with insertions instead of mismatches...
[FIX] Fixing assertion in graph_algorithm_refine_inexact.h.

As reported and fixed by Birte Kehr.

Also see http://trac.seqan.de/ticket/1128
[FIX] Fixing a bug in removeGaps() for gaps_array.h.

Reported and fixed by Birte Kehr.