Added project specific settings folder.
Adjusted codetemplates.xml
Adjusted code template settings.
Update project formatting and autosave settings.
Updated code formatting settings and deleted old formatting files.
Added headless scripts.
Updated headlessScripts.
Updated scripts.
Resolved headless Script problem with query.file names.
Fixed HPC scripts.
Added model parameter, to determine if simulation is terminated with 'System.exit(0)'
Merge branch 'develop' into feature/enipedia