FormatReader: clear the 'core' variable

Suggested by Curtis Rueden.
Zeiss CZI: tidy up metadata hashtable keys
Fix the Imaris metadata page
Make sure that SizeZ/SizeC/SizeT are set for single-file exports
Deltavision: make sure that the DetectorSettings.ID is set

See QA #4877.
Metamorph: look for the channel count in one more place

Reported by Stéphane Dallongeville.
ICS writer: fix support for writing RGB images

Reported by Harri Jäälinoja:

http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-February/003529.html
Merge pull request #368 from melissalinkert/logging

Remove hard dependency on log4j
Merge pull request #373 from melissalinkert/sprint5-bug-fixes

Sprint5 bug fixes
Fix source code links moved to the scifio-tools foder