made the mmsoda-toolbox location into a Makefile variable. Also converted the contents of the Makefile.template to be usable as a formatstring (double percent for the mexa files for instance)
made the versions of the openmpi/gnu and mcr libraries explicit (necessary because the defaults on LISA are inconsistent)
mmsodaCopyMakeFile is no longer a simple copy operation, but now reads from the template, and then uses that to sprintf the MMSODATOOLBOX location, and then fprint to Makefile.
small changes