update cl
MANTA-24 add support for new sam supplementary flag to blt_util
MANTA-24 filter out SA reads for now...
MANTA-24 one more fix..
minor optimizations in graph build while looking into the 8milX case
Fix cmake cache for the boost bootstrap case
tweaks: function docs, use default template params
MANTA-26 Extend fragment stats to provide estimate of full fragment size distribution
add vcf utility script
MANTA-24 add depth buffer objects from starka
MANTA-24 Update to limit input when graph is very dense

Changes made to better handle high depth and high chimeric complexity based on
BWA-mem + FFPE examples
MANTA-24 fix a second BWA-mem specific centromeric slowdown during the graph build
MANTA-24 limit the maximum num of read pairs stored for each edge during candidate generation
MANTA-24 skip very noisy edges during SV candidate evaluation
formatting
update cl
MANTA-26 cleanup corner cases, separate SizeDistribution and add unit tests
MANTA-26 candidate xml stats output
MANTA-26 no xml header
MANTA-26 make xml stats more compact