MANTA-28 take a first serious wack at providing a small indel pathway
MANTA-28 adjust intervals to reduce artifactual local canididate region joining
MANTA-28 prevent double evidence count error when local connected regions merge
MANTA-28 treat close anomalous read pairs as weaker evidence compared to other types
MANTA-28 format refresh
MANTA-28 bugfix
MANTA-28 misc double-checking
MANTA-28 fix off-by-one issues with END and SVLEN
MANTA-28 correctly handle case of close spanning sv hypothesis regions intersecting