Task #0063: Implementing review comments. Documentation fixes.
Task #0064: Work in progress for correct MSD error estimates.
Task #0065: Simple time step distribution analysis.
Task #0066: Non-MPI version.
Task #0066: Minor make system fixes.
Task #0066: Minor make system fixes.
Task #0066: Mac OS X make system fixes.
Task #0066: Fixing serial version linking issue.
Task #0066: Linking flag fix for Mac version.
Task #0068: Including CppUnit in the externals folder.
Task #0068: Make file fix for Mac OS X.
Task #0068: Updated instsall instructions.
Task #0066: MPI version make file fix.
Task #0066: Make system fix.
Task #0066: Make system changes for the MPI version.
Task #0066: Externals make file fix.
Bug #0069: Proper handling of process cutoff for updates + missing test.
Task #0070: Preparing for process numbering in the rate calculator interface.
Task #0070: Process numbers in the rate calculator interface.
Task #0071: Global geometry in the rate calculator interface.