Added mothur tools.
Updated mothur-analyses.R display name.
Merge branch 'master' of local repository into mothur
Genome indexing management tools added
mothur
Aligner index management tools added
Genome lists synchronized for BWA. Bowtie, Bowtie2 and Tophat2
Merge branch 'master' of https://github.com/chipster/chipster.git
Genome indexing tools updated.
Mothur tools.
Reimplemented the update functionality in bundle.py

diff_bundle() should now support several files with same checksum
Latest genome updates to install scripts
Merge branch 'master' of https://github.com/chipster/chipster.git
Build 2.6.1
Version to 2.6.2
Several fixes to bundle.py and to_bundle.py

- added function annotations
- fixed tuple being passed to refine_path()
- changed copy_file() to always use shutil.copy2()
- cleaned up detect_move() and subfunction old_new()
- changed default installation path to /opt/chipster
Merge branch 'master' of local repository into mothur
mothur trim.seqs uniques.seqs tool
Classification scrip modified to print chip-prediction tables
Merge branch 'master' of https://github.com/chipster/chipster.git
fixed problems with empty files