- Fixes issue #245 (duplicate key errors when toggling references, broken autopublish)
- Fixes issue #244 (database lock not released when publishing)
- Modified shared server pom to allow for additional methods to be added to API without causing clirr to error out
- Added support for default annotations.  Each annotation element in the annotation directory (e.g. annotationDirectory.xml) can have an optional isDefault attrribute (y for yes, n for no).  Default annotations for clinvar, 1000g, cosmic65, esp6500, polyphen (ljb2_pp2hvar), avsift have been configured for hg19.  Default annotations are added by default to newly created projects, or newly checked-off reference genomes.  After that, the user is free to check/uncheck them as if they were regular annotations.
Merge branch 'master' of https://github.com/compbio-UofT/medsavant