trying to get codebase compiling with LDC2...
moved reconstruct.d to md/reconstruct.d

(Tag-specific functionality should be located in one directory.)
Also, the work on LDC support continues.
.
a few functions for working with FZ and ZF tags
speed optimizations
added simple fasta reader
Added new module baseinfo.d

Allows to iterate over read bases, providing additional info
for each base, retrieving it from CIGAR and set of tags.
At the moment, only tag FZ is available for that, making it easy
to see what was the flow signal intensity at the site.
[baseinfo] unittest for reverse strand
.
a bit more testing
finally, unittests compile with LDC2 :)
sambamba executable builds with LDC2 now
added LDC2 target for sambamba in the Makefile

The compiled executable performs awfully, however.
It is roughly 2x slower than GDC version. I suspect that LDC doesn't
inline functions aggressively enough. There's a nice post about other
ways of compilation with LDC, which I will look into soon:
http://klickverbot.at/blog/2011/08/d-thrift-gsoc-performance-and-other-random-things/
various codebase fixes

* marked some Makefile targets as .PHONY
* moved scripts for fixing Ragel output to a directory
* added 'goto case' for switch case fallthrough
* marked overriding methods as 'override'
preparing to 0.3.0 release...
updated .gitignore
added workaround for LDC GC; packaging works fine
script for building with GDC
fixes
readme