Working on output-file support
Merge branch 'feature/SEQWARE-1400_continued_oozie_improvements' of github.com:SeqWare/seqware into feature/SEQWARE-1400_continued_oozie_improvements

Conflicts:
	seqware-common/src/main/java/net/sourceforge/seqware/common/util/filetools/ProvisionFilesUtil.java
	seqware-pipeline/src/main/java/net/sourceforge/seqware/pipeline/modules/utilities/ProvisionFiles.java