I think I fixed everything except for the following comment which I don't understand:

On Dec 5, 2013, at 6:09 PM, Manuel Holtgrewe <notifications@github.com> wrote:

> In core/include/seqan/modifier/cyclic_shape.h:
> 
> > +// ==========================================================================
> > +
> > +// --------------------------------------------------------------------------
> > +// Class CyclicShape
> > +// --------------------------------------------------------------------------
> > +
> > +/*!
> > + * @class CyclicShape
> > + * @headerfile <seqan/modifier.h>
> > + *
> > + * @brief A pattern of zeros and ones to mark "don't care"-positions in a text.
> > + *
> > + * @signature template <typename TShapeSpec>
> > + *            CyclicShape<TShapeSpec>;
> > + *
> > + * @tparam TShapeSpec The specializing type. Default is @link GenericCyclicShape
> Wrap description to "The", not "TShapeSpec."
> 
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