removed unused cgi scripts
removed unused OOD libs
removed unused / broken pages
remove old api cgi script, rename new one to 'api.cgi', change resource dir/path to conf variable
api resources: change module namespace from 'resources2' to 'resources'
api: removed old resources
api: moved new api to 'resources' dir
Merge pull request #376 from teharrison/develop

cleanup and restructuring
Merge branch 'develop' of https://github.com/MG-RAST/MG-RAST into develop