Merge branch 'release/1.1.0'
updated manual
updated download script and stats
fix a file deletion bug on windows

The bug occurred randomly and rarely during threading. It was pointed
out by Ryan Kepler, and also noticed by others at a NESCent workshop.

The fix is to try deleting files, and just not worry about errors. The
absolute worst that happens here is that we end up keeping some files
that we wanted to delete. This is not bad. However, it seems that the
bug is actually in Python, and that even though an error is sometimes
thrown when deleting files in threads, the file gets deleted anyway.
catch errors more specifically

we use OSError. Still not perfect but better than nothing.
Bump release to 1.1.1
Merge branch 'master' into develop