use getReadUnmappedFlag() instead of reference name to check if read was aligned
Merge pull request #36 from iainrb/devel

use getReadUnmappedFlag() to check if read was aligned
Updated changelog and version numbers
Merge pull request #37 from iainrb/devel

Updated changelog and version numbers
Merge pull request #38 from wtsi-npg/devel

Merge of devel branch into master for release 1.04
Updated changelog and version numbers for 1.06
Merge pull request #39 from wtsi-npg/devel

Updated changelog and version numbers for 1.06
Merge pull request #40 from wtsi-npg/master

Pull devel up to master following tagging
IlluminaFileReader can now read gzip compressed input
Additional changes so IlluminaFileReader correctly distinguishes gzipped and non-gzipped files
Merge pull request #41 from iainrb/devel

IlluminaFileReader can now read gzip compressed input
Updated version number for release 1.05
Fixed merge conflicts on version number
Merge pull request #42 from iainrb/devel

Merge changes from iainrb/devel for version 1.07
Declare IOException which may be thrown by IlluminaFileReader
Update version to 1.08
Merge pull request #44 from iainrb/devel

Merge changes from iainrb/devel for version 1.08
Allow cycle range by read to be specified on command line
Merge pull request #46 from iainrb/devel

Allow cycle range by read to be specified on command line
Update version to 1.09