SEQWARE-1513 - Match PDE style for Decider jar naming
Custom workflow status checker lockfile
Standardize on JOpt 4.4, demonstrate default parameters in BasicDecider

While we're at it, change the rather restrictive default column size for plugin help output.
SEQWARE-1622 - check for files before launching
SEQWARE-something-or-other-jira-down Add reverse chronological sort as an option for the BasicDecider
Clean-up logging
SEQWARE-1580 - short-circuit evaluation, SEQWARE-1593 - run on multiple wras
SEQWARE-1547 - Return proper ResourceExceptions (instead of InternalServerError) for non-integer values
SEQWARE-1548 - random potential null pointers that PDE expressed concern about
Make chronological (reverse) order the default
Dynamic lock file and case
Refactoring
Merge branch 'develop' into feature/SEQWARE-1546_web_service_error_reporting

Conflicts:
	seqware-webservice/src/main/java/net/sourceforge/seqware/webservice/resources/tables/ProcessIDResource.java
Fix decider formatting for test
Delete random connection close that causes an error now.
Merge pull request #100 from SeqWare/feature/SEQWARE-1625_decider_improvements

Feature/seqware 1625 decider improvements
Merge pull request #101 from SeqWare/feature/SEQWARE-1580_workflow_status_checker_improvements

Feature/seqware 1580 workflow status checker improvements
Tighten up code by using static imports of pure functions.
Merge pull request #102 from SeqWare/feature/SEQWARE-1546_web_service_error_reporting

Feature/seqware 1546 web service error reporting