fix BuildMSM mapping bug, fix MSMLib and tutorial PlotDihedrals to be compaitble with new updates to code base
Merge remote-tracking branch 'github/master'
Just declaring what the methods are and how they'll work
Added angle.py to extract bond angles (like contact.py and dihedral.py), and internal.py to extract the a complete set of redundant internal coordinates
I think it's working now
I think it's working now
Cleaned up a little bit; I think there is still a problem though -- i'm getting 3 more nonredundant internal coordinates in alanine than I should
remove extranious print statement
Fixed critical segfault bug in angles code when there was more than one frame in trajectory
updated logging in BACE
updated SavePDBs.py to work with updated Project class and fixed help infor for BACE
made readme more friendly since it shows up on the main github.com/SimTk/msmbuilder page
Merge pull request #65 from SimTk/friendly_readme

made readme more friendly since it shows up on the main github.com/SimTk...
Bugfix in project and also made validate=False by default when loading a project infor file.
Changed default in Project.__init__ validate=False
added acf function
Merge branch 'master' of https://github.com/SimTk/msmbuilder
Make setup.py autogenerate a version.py script containing git git revision. Basically copied from numpy. Should work even if you dont have git
convert SavePDBs.py and GetRandomConfs.py to SaveStructures.py
added modular trimming functionality, resolved #68