Kluge to get deployment working against ot1, which is ubuntu, which doesn't change /etc/alternatives/java to Java 7
Clone treenexus.git next to the API repo
Test against the api 'local' branch and use the config.example to create our actual config file
Only use the local branch for the API repo while testing and correctly set the path to treenexus.git in private/config
Change the OTI port to 7478 in private/config
Merge remote-tracking branch 'origin/deployment-status-fix' into deploy_local_api
Configure various things in the private/config of the API repo

This is still a WIP and currently a 400 is being returned when testing on ot1.
Document current one-time manual step in new server deployment
Local branch has been merged to master in api repo, so we no longer need to specify a branch when cloning
Merge pull request #148 from OpenTreeOfLife/deploy_local_api

Deploy local api