cmake superbuild for ITK; the package does not 'require' ITK_DIR option from now but will accept one
ITK BUILD_TESTING turned off; Ritk/src/Ritk/Ritk/CMakeLists.txt changed to accomodate R and Rcpp flags on Mac
Components for the following three steps are all in place:
* STEP -- PROGRAMS NEEDED
* Motion Estimation -- antsRegistration, antsMotionCorr
* Brain Extraction -- N3BiasFieldCorrection, ThresholdImage, ImageMath
* ANTS to Template -- ANTS
More ANTS targets can be now called from R.
Also, the following R functions are available:
* ants_motion_estimation
* ants_brain_extraction
* ants_to_template
* ants_compcorr
* antsr_frequency_filtering
fixes to the sources
R functions changed to imitate the SSBT bash scripts more closely
Issue:- std::cout cannot be used in the sources(check R documentation to see why) to properly have all the output go to R console.
Fix:- This commit fixes this issue be using Rcpp::Rcout in all those situations
ants_compcorr_group added and ants_compcorr corrected
more ANTS targets added; all these targets are now accessible from R
more ANTS targets added
more ANTS targets added and are now accessible in R
Renamed package to 'ANTsR'
Added parallel make for Linux and Mac.
User can now specify the number of make jobs to use while installing the package as follows:
R CMD INSTALL --configure-vars="ITK_DIR=<path to itk dir>" --configure-vars="MAKE_JOBS=<number of jobs>"
using ants library from the branch library_superbuild; no more carrying ants sources around with ANTsR
fixed CMakeLists.txt
build issues
ANTS superbuild fix.
Before: Superbuild on ANTS was producing an unexpected directory tree.
After: Directory tree produced now is fixed and superbuild works fine.
README updated
Fixed the behavior difference of programs in Linux and Mac.
Before: Programs behaved differently on Linux and Mac.
After: The behave the same way.
Fix: Instead of compiling all the object files into a single library named 'ANTsR.so', now compiling each object file into a separate library.
changed the ANTS GIT TAG