Added a biomaRt section in the walkthrough of the vignette.
Corrected a small bug in GetDegeneracy causing the function not to work if there is indeed degeneracy.
File renamed to follow bioconductor guidelines
Rene is added as an autor in all documentation
Removed 'hello world' files.
Modifications to Makevar and README for compilation on Windows.
Deleted data and part of fasta file to meet bioconductor 2M limit.
Correction of typos and small mistakes in the documentation.
Adjusted date, version and 'news' for first submission to bioconductor
Added version dependency on data.table. Changed procedure for linking against expat during windows build.
Corrected syntax of dependency
Changes to the configuration procedure suggested by Simon Urbanek.
Added xtandem license information
Added examples to the accessors and convertors man pages.
Corrected typo in License field
revision change
Disabled R C-stack checking
Added #define CSTACK_DEFNS for R_CStackLimit
Corrected the Rprintf commands for better display of xtandem output. (Variables were not correctly interpolated in messages.)
Added a setter for rTParam: setParamValue(). All examples were modified to use the new function. Documenation was updated to include the new function.