Working on cpanm dep install, local::lib and install process
Add peptide positions to coverage view, plus new simple PTM ModLS summary report
Merge branch 'utsw' of /srv/git/cpfp into utsw
Revert "Remove autocrud administrative interface. To be replaced with custom code"

This reverts commit 4c3ab6c8f59188d6c8d31c313d0dfc32fda3b007.
Revert "Remove autocrud and CGIBin wrapper deps from CPAN bundle"

This reverts commit 0edf0bce58ea9e01dd526c7fe5a596864e693be8.
Fix missing / in sed command for mzXML patching
In RemoteSGE shepherd, throw error on SGE submission problems, don't die
Open the ptm report up to peptides with qvalue <=0.05 so users can see less confident IDs
Replace sunits calculation for search complexity
TEMP FIX - show all sequence DBs from other users
Show sunit complexity info on job status page
Add ProxyBase trait for Catalyst again, so CPFP can be proxied away from a root web server path
Use FindBin, not FindBin::Real in scripts, so that they can find a app-specific CPAN module directory without needing FindBin::Real installed
Add ProxyBase so we can proxy from a non-root webserver path
Adding a column to hold scheduler IDs for work packages. ADd SQL script and bump version to 2.0.4
Make RemoteSGE shepherd more robust. Don't die an errors. Warn in log, and then try again in the next scheduling round
Removing a test script added in error
Merging changes from UTSW main and TACC supercomputing branches
Removing another ad-hoc test script left in error
Remove test version of FragmentCalc.pm commited in error