fixed issue with printing the dictionary
final trf stats, added unittests
final trf stats, added unittests
added a function to trfStats and FileIO
cleaned up merge conflict junk
fixed log issues
fixed merge issue
Merge branch 'master' into blin
improved error counts
options
refactor for pier2
improved error message in hmm hit parsing
merge with gcclassif-dev; fixed merge conflicts
Added csv handling for trfStats, added GC for FileIO
fixed trfStats and FileIO for merge with jjzieve
Merge branch 'master' of https://github.com/bylin/nealelab-scripts
Merge branch 'master' into blin
add support for reverse order
delete old files