removed the "output" directory to enable EFO6 writing
minor changes to have compatibility with pecos
Merge branch 'master' of git@github.com:jschlitt84/Gdoc-Interventions

Conflicts:
	findAndReplace.txt
	findAndReplace/config
	findAndReplace/qsub
Merge branch 'master' of git@github.com:jschlitt84/Gdoc-Interventions

Conflicts:
	findAndReplace.txt