Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
Merge branch 'develop' of https://github.com/stan-dev/stan into develop
new generator with template param for including Jacobians (passing unit tests)
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
rearranged code generation order to remove redundancy
Merge remote-tracking branch 'origin/develop' into feature/update-bugs-examples
refactored generated models to remove prob_grad_ad dependency, removed virtual funs, added templates for propto and jacobian_adjust_transform, updated tests, added utility class of static model functions
added models with .txt suffix to avoid recompilation with unwanted main --- need better way to do this
removed prob_grad_ad and stanc_model and tests, fixed other tests to pass with new models
Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-112
moved grad_log_prob method to static util log_prob_grad, made most model methods and get_base1 const, removed get_base1 assign tests, added get_base1_lhs tests
moved is_unitialized() and fill() out of agrad and into math, with overloads in agrad, plus tests
added log_prob_propto function in model/util.hpp and switched model template parameter to last position to allow inference
vectorize some BUGS example models
bugs example vol3/fire using if else statement instead of if_else
use bernoulli_logit and clean up a bugs example model