Changed eqref to autoref

Changed the eqref to autoref to have the word 'Equation' before the
number.
Removed the nomenclature from front matter

All of the nomenclature should be in the source files.
Removed Nomenclature document
Merge branch 'master' into FrontMatter
Added the GARRn

Added the GARRn into the detection criteria.
Working on Existing Technologies

Added a section on the IAT and Proportional Technologies boron straws
Added Prior Work

Added prior work for the LiF/ZnS(Ag) and Boron straw fibers.
Enhanced the introduction to proposed work

Want to move the little bit of optimization techniques from chapter one
to the intro of chapter two.  In addition added a general introduction
to what I hope to accomplish.
Edited the areas for optimization

This could still use a little work, it is a little weak.
Putting in bit about UT Polymers

Putting in a little bit about UT polymers.  Also want to add the
DetectorComparisons.tex as an appendix.
Added DetectorComparisons as an Appendix

Added DetectorComparisons as an appendix, and it seems to work with all
of the images in Latex-base.
Added previous light transport work

Cited the spectra modeling and Introduction to G4 Light transport
papers.
Merging with Front Matter
Merge branch 'FrontMatter'
Merge branch 'ChapterOne'
merged ChapterTwo to master
merged BackMatter to master
Draft went to the saw mill

Merged all of the changes back into master, and put the draft through
the saw mill to clean it up.  Sending up to Chapter Two for Jibbs to
edit.