Merge pull request #32 from braithwaite/master

initial commit of extensive changes for integration meeting
Merge pull request #33 from braithwaite/master

Extensive update including decent docs (continued)
Merge pull request #36 from braithwaite/master

merge hotfix from MG-RAST/master and extensive development from braithwaite/matR (last approx dozen commits)
Merge pull request #37 from MG-RAST/devel

Merge Devel (big)
Merge pull request #38 from braithwaite/master

Update change log
Merge pull request #39 from MG-RAST/devel

Merge devel
Merge pull request #41 from braithwaite/master

merge features / patches
Merge pull request #42 from MG-RAST/devel

Merge devel
Merge pull request #43 from braithwaite/master

demo patch
Merge pull request #44 from MG-RAST/devel

Merge devel
Merge pull request #45 from braithwaite/master

merge analysis routines
Merge pull request #46 from MG-RAST/devel

Merge devel
Merge pull request #47 from braithwaite/master

Merge devel
Merge pull request #48 from MG-RAST/devel

Merge devel
Merge pull request #49 from braithwaite/master

Merge devel
Merge pull request #50 from MG-RAST/devel

Merge devel
Merge pull request #51 from braithwaite/master

New developments
Merge pull request #52 from braithwaite/master

New developments
Kevin editing KBase-matR-tutorial.html
Merge pull request #53 from braithwaite/master

Merge devel