ctFIRE beta version 1.1:

Compared to the previous version, this version adds the following main features:

(1) batch mode: process multiple images for each run

(2) stack image: preview stack, select the whole stack or stack slice range to process

(3) post-process .mat file: choose one or multiple mat files to do post processing, such as change the fiber length limitation to get overlaid image and histograms

(4) edit box for bins number, popup menu for run options, automatic save path
Users manual for ctFIRE beta version 1.1, including a flow chart and tutorial 1. Tutorial 2, 3, 4 to be added in the next couple of days.
a few minor editing for the interface.
correct the information label of GUI, fix a bug for not processing a whole stack by default, and add exception handling for import data/image
test stack used in the tutorials of the user manual of Beta version 1.1
add tutorial 2, 3, 4. as well as edit/format the manual.
stand alone application for ctFIRE Beta v1.1. Verify the MATLAB Compiler Runtime (MCR) is installed and ensure you have installed version 7.15.
fix a bug of importing image
fix a bug of not properly importing a image
add features to save entered parameters, load .xlsx format parameter
add option to output non overlaid extracted fibers
append the parameters for curvelet transform
add axes in the non-overlaid image of extracted fibers
add the two buttons for both load and update parameters as well as the callback functions.
remove the output of ct reconstruction .mat file
YL:
(1) add the output options for straightness and width.
(2) change the variable names for all the histograms, including length, angle, straightness, and width .
(3) add the output for non-overlaid fibers.
(4) allow the stack xlsx output to be saved in a single file.

this version is called Beta version 1.2
read the saved overlaid image to show
correct a spelling error
standalone beta version 1.2 for Windows 64-Bit, need to install Matlab MCR version 7.15(64-bit) to run this application.
(1) save output data in .csv files rather than .xlsx files, as Mac doesn't support the two functions of xlswrite.
(2) Parameters also are saved in csv file.
(3) change the figure margin control, so that the margin can be set to zero.