Removed intersect2 and TransCount from exportedMethods()
Worked on Rd files.
Deleted extraneous files
Removed generic function 'id'
Removed ids from exportMethods() and updated License
Updated documentation
Cleaned out vignette directory and worked on Rd files

We moved all the files in vignettes/ to inst/extdata to help get us through R CMD check.
Working on R CMD check

...almost there.
Added INDEX file
Removed INDEX file

Not sure how to use it, or if it's desireable to have, and so on.
Removed table from package man page

Too difficult to keep it up to date.  Better just to use the DESCRIPTION file.
Fixed problem with documentation for '[' method
Updated ScanTrio documentation