sdhash: Fix typo in Makefile's LDFLAGS

Closes #15846.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Armadillo 3.4.4

Closes #15848.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Mercurial: install extensions

Closes #15839.
Libvirt 0.9.11.7 and 1.0.0.

Closes #15847.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
ctags: Apply patch to fix invalid use of const.

This restores compatibility with llvm.

Closes #15840.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
bibutils 4.15

Closes #15864.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
mosquitto 1.0.5

Closes #15867.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
perforce 2012.2.536738

Closes #15868.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Fix dblatex dependency declaration.

Use explicit call to LanguageModuleDependency.new instead.

Closes #15863.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Perforce Server 2012.2

Closes #15872.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
gnuplot 4.6.1 + dep on pango for wx

- Upgrade to version 4.6.1
- Remove the patch. It decides aquaterm=no on its own now.
- Fix HEAD by not running `autoreconf`. Instead run `./prepare`
- Add an option to build the Qt4 terminal plus optional Qt dep.
- Add an option to build the testsuite. It's fantastic.
- Add an option to build the cairo terminals using pango.
- Make the pango dep active if `--cario` or `--wx` because
- the wxWidgets termial requires pango.
- Add `--without-latex` and `--without-tutorial` so no LaTeX Req.
- Add `--without-cairo` unless it is turned on as an option.
- Add an `ENV.j1` to fix an emacs related file locking error.
- Remove the unrecognized `--disable-debug` & aquaterm options.
- Works with superenv and passes its testsuite on 10.8.2.

Fixes #15692

Closes #15829.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
mongodb: change startup script config finder

Closes #15814.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
pyside-tools 0.2.14

Closes #15874.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
rest-shell 1.2.0.RELEASE

Closes #15884.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
CasperJS RC4

Closes #15887.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
openimageio 1.0.10

- Upgrade to 1.0.10
- Add a CMake variable to help it find OpenJpeg includes.
- Passes 39/39 tests
- Works with superenv

Closes #15888.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
JSTestDriver 1.3.5

Closes #15882.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
emboss: fix issue with X11

- Add an option to build without-x
- Add a `depends_on :x11` otherwise
- Add a `depends_on :libpng` that was missing.
- Add a `depends_on 'gd'` that is optional.
- Add a `depends_on 'libharu'` also optional for pdf output.
- Add a flag to enable 64bit pointers on 32bit machines.
- Add a flag to enable pthreads.

It's worth noting that this will build against mysql or postgresql.
It searches for `pg_config`. It's reasonable for molecular biology
grinding software have some sort of DB enabled. In that case,
we might want to add an `ENV :userpaths` to pick up the preferred
`pg_config` or we want to add a depends_on postgresql. Thoughts?

Fixes #15782

Closes #15817.

Signed-off-by: Adam Vandenberg <flangy@gmail.com>
sqlite 3.7.14.1

*Note*: the docs tarball was not updated in this release, but I
incremented the version for consistency.

Signed-off-by: Jack Nagel <jacknagel@gmail.com>
Hoist top-level directory list into a constant