Inital Organization

Simulation.js very difficult to read, variable and function names poor. Started to rename some functions.
More small name changes
Hacked Pyramid
Pyramid Fix

21 Rows, Re-initializing with max value on sim redraw, other small css changes.
Popup Window Styles
Wired up btns and popups
Replaced Main Sim
Docs updated
Firefox panel wrap bugfix

Fixed a bug that caused the third simulation panel to wrap when viewing in firefox