Unimportant changes..

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@964 c0027639-9190-0b57-01eb-f09a03790dae
Will use this branch to add some c api functions

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@965 c0027639-9190-0b57-01eb-f09a03790dae
Added logging group to the C API..

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@966 c0027639-9190-0b57-01eb-f09a03790dae
Working on doxygen docs for the C api

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@967 c0027639-9190-0b57-01eb-f09a03790dae
Fixed all doxygen warnings about missing documentation in the file rrc_api.h and rrc_api.cpp

Added doxygen stuff to all files in the c api

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@968 c0027639-9190-0b57-01eb-f09a03790dae
Cleaned up doxygen docs for plugins

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@969 c0027639-9190-0b57-01eb-f09a03790dae
Fixed docs in rrc_parameters..


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@970 c0027639-9190-0b57-01eb-f09a03790dae
Added documentation group for multithreading (jobs)
Added docs for multi threading api functions

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@971 c0027639-9190-0b57-01eb-f09a03790dae
Fixed documentation in rrc_utilities

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@972 c0027639-9190-0b57-01eb-f09a03790dae
Updated more doxygen docs.. no more un-documented parameters or functions..

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@973 c0027639-9190-0b57-01eb-f09a03790dae
Updated python to agree with latest changes

changed name of C dll, rr_c_api.dll -> rrc_api.dll
getVersion -> getAPIVersion
all "Result" -> "RRData"
getCopyright no longer need a roadrunner handle



git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@986 c0027639-9190-0b57-01eb-f09a03790dae
Added two more test to suite, dealing with init(S1) strings in get and setValue

We now have 939 tests to pass


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@987 c0027639-9190-0b57-01eb-f09a03790dae
Added Stop logging functions to the C api


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@988 c0027639-9190-0b57-01eb-f09a03790dae
Added set/getFloatingSpeciesInitialConcentrationByIndex functions to the API

Added tests for the above, and also added to python.


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@989 c0027639-9190-0b57-01eb-f09a03790dae
Update more

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@991 c0027639-9190-0b57-01eb-f09a03790dae
what about this

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@992 c0027639-9190-0b57-01eb-f09a03790dae
Branch to forward NOM functionality to roadrunners C API

git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/NOM_forwarding@993 c0027639-9190-0b57-01eb-f09a03790dae
Added set and get FloatingSpeciesInitialConcentrationByIndex


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/adding_c_api_functions@1003 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 974-1025 from branches/develop:
Merged revision(s) 966-973 from branches/adding_c_api_functions:
Added logging group to the C API..
........
Working on doxygen docs for the C api
........
Fixed all doxygen warnings about missing documentation in the file rrc_api.h and rrc_api.cpp

Added doxygen stuff to all files in the c api
........
Cleaned up doxygen docs for plugins
........
Fixed docs in rrc_parameters..

........
Added documentation group for multithreading (jobs)
Added docs for multi threading api functions
........
Fixed documentation in rrc_utilities
........
Updated more doxygen docs.. no more un-documented parameters or functions..
........

........
Updated doxygen docs
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Cleaned up devel branch to run/compile with VS2012
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Updated properties on html docs
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Moved docs
........
Deleted docs from branch..
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Removed docs folder..
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merged mem leak fixes
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........

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remove debug code
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link statically
........
Updated python to agree with latest changes

changed name of C dll, rr_c_api.dll -> rrc_api.dll
getVersion -> getAPIVersion
all "Result" -> "RRData"
getCopyright no longer need a roadrunner handle


........
Added two more test to suite, dealing with init(S1) strings in get and setValue

We now have 939 tests to pass

........
Added Stop logging functions to the C api

........
Added set/getFloatingSpeciesInitialConcentrationByIndex functions to the API

Added tests for the above, and also added to python.

........
Updated mime type
........
Update more
........
what about this
........
Branch to forward NOM functionality to roadrunners C API
........
new class to be shared among all model generators
........
modelgen refactor tests OK
........
mogelgen refactor
........
moved all model descriptors to new shared class
........
completly decoupled model and modelgenerator
........
moved all symbolic sbml info to shared symbols class with all constant vars, add constness
........
moved all symbolic sbml info to shared symbols class with all constant vars, add constness
........
removed temp code
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memory leak fixes
........
Added set and get FloatingSpeciesInitialConcentrationByIndex

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fixed long standing and very pesky memory leaks
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delete feature branch, will re-branch off develop
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initial stubbed out LLVM classes
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updated doxygen, fixed potential memory corruption issue
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update copyright
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Merge branch 'gdevelop' into gfeature-llvm
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Got new code working with CG. 

Passing ms.mModelName in rrCopmiledExecutableModel in function setupModelData causes an access violation as the function is exited. Bizarre..
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Adding Cmake stuff for plugins
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Added plugin stuff to CMake..
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Merged revision(s)  from branches/add_cmake_for_plugins:

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Added time.h in rrNoise.cpp file for Visual Studio..


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changed all Windows specific definitions to use cross platform defines in rrExporter.h
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Merged revision(s) 986-1003 from branches/adding_c_api_functions:
Updated python to agree with latest changes

changed name of C dll, rr_c_api.dll -> rrc_api.dll
getVersion -> getAPIVersion
all "Result" -> "RRData"
getCopyright no longer need a roadrunner handle

........
Added two more test to suite, dealing with init(S1) strings in get and setValue

We now have 942 tests to pass

........
Added Stop logging functions to the C api

........
Added set/getFloatingSpeciesInitialConcentrationByIndex functions to the API

Added tests for the above, and also added to python.

........
Updated mime type
........
Update more
........
what about this
........
Branch to forward NOM functionality to roadrunners C API
........
new class to be shared among all model generators
........
modelgen refactor tests OK
........
mogelgen refactor
........
moved all model descriptors to new shared class
........
completly decoupled model and modelgenerator
........
moved all symbolic sbml info to shared symbols class with all constant vars, add constness
........
moved all symbolic sbml info to shared symbols class with all constant vars, add constness
........
removed temp code
........
memory leak fixes
........
Added set and get FloatingSpeciesInitialConcentrationByIndex

........

........


git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@1026 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 993-1028 from trunk:
Branch to forward NOM functionality to roadrunners C API


git-svn-id: https://roadrunnerlib.googlecode.com/svn/branches/NOM_forwarding@1029 c0027639-9190-0b57-01eb-f09a03790dae