Begin changes to allow out-of-source builds.
Modifying makefiles in inter directory.
Working on sources.mk files in mcMd (not done)
Enabling out of source builds for mcMd (seems to work)
Adding forgotten mcMd/makefile in build/serial
Merge branch 'devel' into build
Small change to build/serial/makefile
Allowing out of source builds for ddMd
Merge branch 'devel' into build
Adding missing build/serial/ddMd/makefile
Merge branch 'build' of github.com:/dmorse/simpatico into build
Adding parallel build directory
Modifying main makefile and setup script.
Editing manual/user/compile.dox to reflect changes.
Adding missing makefile in build/parallel
Editing .gitignore files and makefiles
Moving tests to src directory
Updating makefiles in util/tests
Adding util/tests directories in build directories.
Updating makefiles in src/inter/tests unit tests.