adding new fxn find_bad_data2, which will include ear and toe tags. Has additional ququalifier, that a tag should not occur for longer than 4 years (very rare in dataset, only occurs in a few krat individuals). Likely indicates a repeated toe tag.)
adding a function to look for cases where the same tag occurs for > 4 years. It is likely in these cases that tag has been duplicated over these time periods, and should be used with caution
added a condition to the is_duplicate_tag fxn to check only ear and toe tags. PIT tags are very unlikely to be duplicated, and a long recapture time is in these cases, most likely a real observation.
subsetDat function now changes species to u for unknown, so we can keep that data for now, and deletes all rows wehre species is unsure (since species is among hte most important piece of info here)
updated rodent_wrapper.r to reflect need to include more years adn more species in the analysis. Is a bit messy now. Making sure all code works with the larger dataset
added TODO notes to fix tomorrow. Need to make sure all fxns work with new set of years, fix inputs and anything that was specific to 2000-2009 range