changes to handle new annotation format
fix scoping bug preventing commit from working
Merge branch 'master' of ssh://git/srv/git/genome
Updated class browser cache.
Updated `genome` tab completion.
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
New version of NetMHC added
Removing RunNetmhc.t
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
Merge remote-tracking branch: upstream/master