Cool. I say push it through. 

Sent from my iPhone

On Feb 27, 2013, at 9:12 PM, Robert McGibbon <notifications@github.com> wrote:

> In src/python/assigning.py:
> 
> >  
> >      n_trajs, max_traj_length = project.n_trajs, np.max(project.traj_lengths)
> >      assignments = -1 * np.ones((n_trajs, max_traj_length), dtype='int')
> >      distances = -1 * np.ones((n_trajs, max_traj_length), dtype='float32')
> >  
> > -    # if we're using an RMSD metric, get the relevant indices from the generators
> > -    # then inject a blank array into RMSD
> > -    # TODO clean this up 
> > -    if isinstance(metric, metrics.RMSD):
> > -        atom_indices = metric.atomindices
> > -        metric.atomindices = None # probably bad...
> > -        logger.info('RMSD metric - loading only the atom indices required')
> > -    else:
> > -        atom_indices = None
> > -
> >      pgens = metric.prepare_trajectory(generators)
> >  
> >      for i in xrange(n_trajs):
> I know. it passes on my mac.
> 
> $ nosetests
> /Library/Frameworks/EPD64.framework/Versions/7.3/lib/python2.7/site-packages/msmbuilder-2.6.dev-py2.7-macosx-10.5-x86_64.egg/msmbuilder/geometry/angle.py:68: RuntimeWarning: xyzlist is not float32: copying
>   warnings.warn("xyzlist is not float32: copying", RuntimeWarning)
> /Library/Frameworks/EPD64.framework/Versions/7.3/lib/python2.7/site-packages/msmbuilder-2.6.dev-py2.7-macosx-10.5-x86_64.egg/msmbuilder/geometry/angle.py:71: RuntimeWarning: angle_indpyices is not int32: copying
>   warnings.warn("angle_indpyices is not int32: copying", RuntimeWarning)
> ......................S.......S........SSS...........S.......................S...............................................
> ----------------------------------------------------------------------
> Ran 125 tests in 43.418s
> 
> OK (SKIP=7)
> —
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