Outline jquery plugin
Pass plot and use strict
Use jquery extend.
Remove dependency on underscore.js
Remove underscore library
Update readme a little.
Remove javascript from index.html.

That code will go into a app.js to be more similar to how this is used in
pratice.
Add application javascript
First jquery plugin
Merge branch 'develop' into feature/jquery-plugin

Conflicts:
	index.html
Reorganize plugin

Anton suggests that the plugin should have a single entry point to set
everything up. I changed things around to match this. Now the .rna2d function
takes an init object which will init each of the parts in the plugin. In
addition, each part is now a property of the rna2d function. Not sure if
exposing them is a good idea, but this does make for simple organization.
Use given plot for all subcomponents.
Remove unused and unimplemented near controls.
Rename init to controls.

I think it's a bit clearer as to what is being setup this way.
Reorganize data sources in plugin.

Now each data source is it's own object in the options. Each one of which as a
url and a parser property. This is cleaner than the previous method I think.
Semi working jquery plugin.

This plugin seems to load all data correctly and can deal with some errors.
However, the overall library does not work yet. This could be from a variety of
reasons, but this is complete enough to commit for now.
Formatting and add data tags.

The plugin uses some data tags which I added as well as reformatting the file
with vims formatting rules.
Use plugin in app.js
use correct parser for interactions.

Interaction data is already a csv with a header, no need to add another.
Must select before appending.

We have to use D3's select before we can use it's append to add the required
elements.