moving dir
got everything building
Pom files had been cleaned-up (unused maven plugin removed).
Other bundles had been refactored to use new application-api.
Upgraded to use Spring 3.0.5.RELEASE modules.
Note: this has nothing to do with Spring DM (spring-osqi-*, v1.2.1) or Blueprint yet!
It does compile (clean-up cytoscape, old snapshot bundles, subtree from your m2 repo otherwise...)
[maven-release-plugin] prepare release impl-parent-3.0.0-alpha6
[maven-release-plugin] prepare for next development iteration
[maven-release-plugin] prepare release impl-parent-3.0.0-alpha7
[maven-release-plugin] prepare for next development iteration
Refactored the BioPAX plugin: now it converts BioPAX L2 to the Level3 and also unfers organism, dataSource, and displayName properties automatically. A lot of junk/legacy code were removed and samll bugs fixed. Though, there is still a weird behavior (visual style...)
Continue with re-factoring and clean-up (e.g., several attribute colums are now created in the hidden_attrs namespace; better api - to use from the cpath2-impl core plugin, etc..)
removed the use of spring-dm in lieu of our own CyActivator
using paxtools v4.0.0b3 modules
Removed <repositories> element (it is inherited from parent poms)
Changed method calls for new CyTable parameter.
Updated paxtools/biopax versions; fixed a compilation issue (due to a core interface recently changed).
Changed CyNetworkFactory method names to be more consistent.
Renamed factory methods to be more consistent.
Renamed factory methods to be more consistent
changed TaskFactory getTaskIterator to createTaskIterator to be more consistent