Fasta generation and bed generation now uses JEX framework.
Merge branch 'dev' into synfind
Tidied up SynFind.
The base directory is now based on genome id.
Enabled perl v5.10 features for SynFind.
Organisms now sorted by genome id.
Refactored genome preprocessing.
SynFind commands moved to JEX.
Merged dev into synfind.
Added job status to SynFind.
Merged SynFind conflict.
Merge branch 'synfind' into dev
Added perl v5.10 features.
Updated the SynMap tmpl and moved javascript to an external file.
Added new styles and updated SynMap template.
Added padding to results.
Change cancel placement, getting started info and added new transition effects.
Merge branch 'master' into dev
Merge branch 'dev' into synmap
Merge branch 'master' into dev