Metamorph: clean up image names for plate data
Metamorph: correct image names for multiple series per position
Metamorph: use the stage position index in the image name

...instead of the series index.
merge develop -D org -I include -E exclude: PR 528 (Tile performance improvements for VMS and NDPI)
merge develop -D org -I include -E exclude: PR 635 (Use jgit-buildnumber to set version information in Maven)
merge develop -D org -I include -E exclude: PR 644 (Add support for writing ModuloAlong* annotations)
merge develop -D org -I include -E exclude: PR 689 (Initial C++ implementation)
merge develop -D org -I include -E exclude: PR 702 (Upgrade SLF4J to 1.7.2 (rebased onto develop))
merge develop -D org -I include -E exclude: PR 706 (Remove "Download from OMERO" from the plugin menu)
merge develop -D org -I include -E exclude: PR 708 (Metamorph image names (rebased onto develop))