Added help text for running generated Makeflow file
Iterate through DirStore objects using different suffix
Option to use different URL for Krona output
Accept option for embedding Krona sources into output. Training composite models is now optional.
Updating generation of phage host DB
Updating generation of phage host DB
Creation of SeqDbFasta is fully parallel, including compression
Removed use of depricated numpy unique1d methods
chdir context manager; bzip2 handling in openCompressed()
Better option handling for taxonomic DB pre-processing
Install Python modules for command line API generation