Added CollectRnaSeqMetrics for RAP-RNA analysis
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git
Fixed bug in PairedEndWriter that resulted in reads at the beginning of
chromosomes being dropped and not included in the PairedEnd.bam file
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git